Progetti BOINC

[Valuk]

Wu ferma all' 83 %

[fasix]

scusami anche a me il tempo di elaborazione e` diminuito man mano che lavoravo

[Valuk]

Si a me pure ma poi si è fermato ed ora si è abortita da sola la wu

[fasix]

cazzus
ne ha scaricate altre?

[Valuk]

NO

[Valuk]

Altro progetto Boinc Imaging of Seismic data (BIoS) Project
sembra molto trascurato e pare non funzioni

[Northern Antarctica]

Originariamente inviato da Valuk

Beh io 512 li ho...

Adesso pure io... finalmente ho "rimediato" ( ) un PC con 512 Mb e sfruttando il fermo di LHC ho scaricato la prima WU "seria" di Rosetta... vediamo come va

[MaxP4]

http://fightaidsathome.scripps.edu/index.html


...dovrebbe essere operativo!

http://punto-informatico.it/p.asp?i=56385&r=PI

[Northern Antarctica]

Originariamente inviato da Northern Antarctica

Adesso pure io... finalmente ho "rimediato" ( ) un PC con 512 Mb e sfruttando il fermo di LHC ho scaricato la prima WU "seria" di Rosetta... vediamo come va

I primi 90 crediti e team joinato

[Northern Antarctica]

Originariamente inviato da MaxP4

http://fightaidsathome.scripps.edu/index.html


...dovrebbe essere operativo!

http://punto-informatico.it/p.asp?i=56385&r=PI

Non sembra basato su piattaforma Boinc

[Valuk]

Aggiungo un' altro progetto Malaria Control Project

[fasix]

qualche novita'?

[Valuk]

SIMAP

[fasix]

cosa? cioe?

[Valuk]

[center]SIMAP wcco la home ufficiale. è un progetto simile al predictor, molto interessante, al quale mi sto dedicando, forse sarà il mio progetto di punta

Similarity Matrix of Proteins

Today, protein sequence comparison is the most powerful tool in computational biology for characterizing protein sequences because of the enormous amount of information that is preserved throughout the evolutionary process. SIMAP is a public database of pre-calculated protein similarities that plays a key role in many bioinformatics methods. It contains about all currently published protein sequences and is continuously updated. The computational effort for keeping SIMAP up-to-date is constantly increasing. Please help to update SIMAP by calculating protein similarities on your computer. The computing power you donate supports manifold biological research projects that make use of SIMAP data.

About SIMAP

What is SIMAP?
SIMAP is a database of protein similarities. It contains about all currently published protein sequences and is continuously updated. Protein similarities are computed using the FASTA algorithm which provides optimal speed and sensitivity. SIMAP is to our knowledge the only project that combines comprehensive coverage with respect to all known proteins and incremental update capabilities.

What is SIMAP used for?
Because of the huge amount of known protein sequences in public databases it became clear that most of them will not be experimentally characterized in the near future. Nevertheless, proteins that have evolved from a common ancestor often share same functions (so-called orthologs). So it is possible to infer the function of a non-characterized protein from an ortholog with known function. A well-known example are the investigations about mouse genes and proteins. Their results are also beeing true for orthologous human genes and proteins in many cases. Protein similarities provide information about relations between proteins and are necessary for the prediction of orthologs. There are many more bioinformatics methods that rely on protein similarity. Our protein similarity database provides pre-computed similarity data and represents the known protein space. This opens completely new perspectives compared to the commonly used method to repeatedly re-calculate such kind of data. SIMAP is regularly updated. The similarity matrix is simply beeing incrementally extended if new sequences occur. The use of SIMAP is completely free for education and public research.

Why do we need distributed computing for SIMAP?
The computational costs to calculate the similarity data depend on the square of the number of contained sequences. So the computational effort for keeping the matrix up-to-date is constantly increasing. Our internal resources that perform calculations for SIMAP since years are not longer sufficient to keep track of all new sequences. That's why we implemented a SIMAP-client for the BOINC platform (Berkeley Open Infrastructure for Network Computing) which is based on the FASTA algorithm to detect sequence similarities.

What are the institutions behind SIMAP?
SIMAP is a joint project of the GSF National Research Center for Environment and Health, Neuherberg and Technical University Munich, Center of Life and Food Science Weihenstephan (both in Germany). Please contact Thomas Rattei (Department of Genome Oriented Bioinformatics, TU Munich).


BOINCSIMAP is university project that would not be working without engaged students that spend much of their free time on it. So not every problem can be solved immediately, but we try to address any question, suggestion, comment and problem in our forum.

[fasix]

grazie

[fasix]

perche' non si aggiorna il primo post ?
manca per esempio rosetta...

[Valuk]

Nel primo post mancano tantissimi progetti, spero che EEH lo aggiorni al più presto

[fasix]

anche GHz...basta che lo aggiornino

[ScaR_]

io dopo una paio di settimane su seti ho deciso che potrebbe essere + costruttivo il mio scaccolo su rosetta! e mi sto impegnando in quel senso!
vedo che non siamo molti su questo programma, io personalmente lo ritengo molto valido